rs31656126 SNP Detail

Summary

• ID
  rs31656126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161346361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgttttgt tttgttttgt tttgttttTC
  TGTCTGTAAA TCCACACACA TAGTTTTTCC CACATATTAT ATTTCCAAAC AAATGCTTGT
  GATTCTTATT TCATTTCAAG GTAGGTAAGT GCAGAGAGAt acaccccatg ctacctgctt
  R
  cttccagaca gcctcttcca ctctcccaca cttccacagt cttaaaatct ctgtcaatgg
  aatgtgatga taccaatagt gggctgggtt agttaaccat caaaacaatc ccccatagac
  atgcctgtag aataatctga tataagcgac                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45055645	mCV24543262	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss60336258	NES15835502	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	G	G		G	G	G	G
ss145915621	ENSMUSSNP1368776	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
ss320080973	CHEV_1_163448923	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31656126					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336258	NES15835502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161346361 () rs orientation: forward

Symbol	Name	Function Class
Gm31815	predicted gene, 31815	within coordinates
Rr421813	regulatory region 421813	1101 bp distal