rs31656159 SNP Detail

Summary

• ID
  rs31656159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44397142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCCCCT TCCCCAGCAC
  CATACCTCGC CCTACCAAAC ATATCCCTGG CTTCCCTGGC TTTTTAAATA GAACATAACA
  GTATATATTT GAGATGCTCA AATAATAGAT ACAAATAATC TTTCCTTTTA AATTTGTTTA
  TGACTGCTTC AAAGTGCTAT GTGTGTACAC CTAAGTGCCT TTAGAAGCCC AAGAGGGGGT
  Y
  TGATACCCCG AAACTGAAGC AATAGATGTC TCTGGGCCAT TATTGTAGGT ATTGGTCGCG
  AGAGGAAACC CCCGCTTAAG AGCCGGGCCT ACGCCCGGCT GTGAGCACTC AAGGGTTCAG
  CATTCTGTCA GGGCCTCCCA CCCCGGCCAC AGAGGACTAA GGCCATGGGC GCCTGGGCTT
  AGTCTCCGTA CCTCGGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46055245	mCV27580300	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss149120960	ENSMUSSNP6862915	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31656159					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44397142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	666 bp proximal
Rr400296	regulatory region 400296	577 bp upstream
Tssr66420	transcription start site region 66420	785 bp upstream
Tssr66421	transcription start site region 66421	884 bp upstream
Tssr66422	transcription start site region 66422	922 bp upstream
Tssr66423	transcription start site region 66423	1188 bp upstream
Tssr66424	transcription start site region 66424	1270 bp upstream
Vrk3	vaccinia related kinase 3	907 bp upstream
Zfp473	zinc finger protein 473	within coordinates