rs31657106 SNP Detail

Summary

• ID
  rs31657106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:40400758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATAGGA AACCTGGAGA
  ATCAGAGAAA TTCCAGGGGT CAGTATAGTA GAACAATGGG TACTCATGTA TGCTGGAGTG
  TTGCAGAGGC AGGAGAAATG TTTGAGGAAT TCTGAAAATA CCCCAAAGAT AAAAAGAGCT
  GGTCTTACAC ACAAAGTACA TTGAGCACTG GACAGATATC ATGGATCACT TCCTTATAAA
  Y
  TGAACATGCA GTTGCATTTG TTGAAGCTAT TTTTCCTGTA GATATGCTCC CGAACATTTA
  CATAGCAACA CAGTTGAATA TAGGACTCAG ATTTCATTTA ACTGATTTCT AGTCAACTAG
  TTGAAATCTT TCCTTTAGAC AGGCAGTACC TGTATAGAAC TCAGCTTTGT TGGGATGCAA
  TAAATAGGAA GGTATTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49262573	NES12698249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31657106					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49262573	NES12698249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:40400758 () rs orientation: forward

Symbol	Name	Function Class
Kctd16	potassium channel tetramerisation domain containing 16	Intron
Tssr150847	transcription start site region 150847	1891 bp downstream