rs31657421 SNP Detail

Summary

• ID
  rs31657421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:77492722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTGATT TTGAATTTGG
  AAAGTGTGAG TCCCTCAGCT CTTCTTGTTT AAAGGAGAAG TAGTCCACCA GGTCCAGAAG
  CTCGCCATTC CCAGGGCTGA GGAAAAGCCT TGCTGTGGCT CTGGGTTATG GCCCAGTCCA
  GTGGCTGAGG AAGGCTTGGT TGTGGTTAGC ACTAACACTC AGGCTGTGAT CCCTGGCACC
  R
  CTGCCTCCCT GCTTCCTACC CTAGATGTTG ATGTTTTAGC AGAAAGCTGG TGTTCCCACC
  ATCATACAGC AGTGGCATCT ACCTGCGTGG TAGATTTTTA ATTTGTCTTA AACGAGGAAG
  GGCCACGGTA AAGGATAGAC TTATAGTAAA TTGGTACTTC AAATAAACAT TATGTACTTA
  TGTTTATAAA GAAAAAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49761187	NES12392112	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31657421					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49761187	NES12392112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:77492722 () rs orientation: forward

Symbol	Name	Function Class
Prrg1	proline rich Gla (G-carboxyglutamic acid) 1	497 bp downstream