rs31658054 SNP Detail

Summary

• ID
  rs31658054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:40397859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGAATT CACCATCTGT
  TTCCAAGCCT CTTCTTCTTA TGTGTTTCTC AGTCTCTGTA AACAGCATCT TCAGTTCATT
  CAGGTCTTGA TGAACAATAA CCACGGAAAA CATCCCAATC CTTCATTCTC CCCAGTGAAC
  CTACTGGATG TCGTCTTCCT TCACCTTTTC CACAAAATTC CTTCCATCGA TGCTGAAAAC
  Y
  ATAGATGCTA CTCCTGTTTG GGTCACTAGT GTTGCCTTTC TAGGCAACCA CCAAGATAGT
  TGGATGATAG TCCTACCTCC CTATGATAGT CCCTTTTGGA TATAGTGTCT GTGCTGCAGA
  CATGGCGAGG TTTTGAAGAC ATGATTCTGA CCATGCCACT TTTCCACTTT AAACCTTCTT
  TACCATGAAG AGCTTGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49262581	NES12698360	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31658054					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49262581	NES12698360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:40397859 () rs orientation: forward

Symbol	Name	Function Class
Kctd16	potassium channel tetramerisation domain containing 16	within coordinates
Tssr150847	transcription start site region 150847	1001 bp upstream