rs31658309 SNP Detail

Summary

• ID
  rs31658309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36598283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGCAGCGAA CCACCACCAC CTTCAGAACT GCCAGCCTCC GCCCACAGGC GCTCCTAGAA
  GTAACTTGTA GCTGTGGCCT CCTGGACGGT GCTGGCTGGC AAATCCTTCC AGCCAGCTGG
  TCCTCCAGTG GGCAGGTGGA CTGAGAAACC TCGGGGAAAC TGCCCCAGCG GTACCTGGAG
  ACCACCCCTA ACCAGAATCA AAGGACAGGG ACGAAGGGAA GGAGGCCTGG AGGTTTCTGT
  GGTAACTTTG AGCCCCAGGG GGCAGTCCCG GAGGGGAAAA AACACTTCAG ACCCCATAAG
  Y
  AGATCTGGAG TATAAATCAG TCCGACAGCA GCTTTTGTTC TGGGCTAAAA CGTGGCACCT
  GAGAAGTGAA GAGCAGAAGA GCAATGGGAG TAATCGAGAA TGGCAGCCCA GTTTGGTTTC
  AGTAACAATT GGGTCTTTAC TGGGACACAG AAGGGCCCCT TCTCCCTCGC TGGCCAGAGC
  CACGTTTCCC AGCTCCTTTC CATTAGGAAA CAAAGCTGTG ACCTCAGAGA TAGGAGGCAG
  GCCAGCTATT GCCAGGGGTG GGCAGGGAGG GTGTCCTATG GAAGCTGGCC AGGGAGGGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45055671	mCV27595091	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31658309					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36598283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi148	CpG island 148	276 bp distal
D430040D24Rik	RIKEN cDNA D430040D24 gene	within coordinates
Rr409350	regulatory region 409350	1933 bp distal
Rr409351	regulatory region 409351	870 bp distal
Rr409352	regulatory region 409352	833 bp distal
Rr409353	regulatory region 409353	within coordinates
Rr409354	regulatory region 409354	1617 bp proximal
Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	853 bp upstream
Tssr40	transcription start site region 40	1471 bp downstream
Tssr11263	transcription start site region 11263	1641 bp upstream
Tssr11264	transcription start site region 11264	990 bp upstream
Tssr11265	transcription start site region 11265	936 bp upstream
Tssr11266	transcription start site region 11266	836 bp upstream