rs31658577 SNP Detail

Summary

• ID
  rs31658577
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:166259023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGAAAT GATAACATGT
  TTTATGTAAA AGAACAAGAG GTAATGAAGG CAAAAACTCT TTGCAAGCCA AATGAACTGG
  GTAACACTCA CAGACATTTG CCCAGAGTAG GCAGCCAAAG CTAATGGTGA GTTTGGAGGC
  AACACCACAA TCTTTTGAAG ACTCTTCAAG ACATTTTTAA AATGTAGGAT TAGAAATTAA
  K
  CTGTGTGAGA TCTCAGTAAC CTTTACTGGC CACTGTGGGA AAACCACTAT TGTCATAATG
  TGGAATATTA AGAGCATCTG CTTGGGTCAT CTGATGATTA GCTAAGTAGG TCAGAATGAG
  GGTGGGCCTG CTGGGGAGTG GGTTAGGCTG AGCACAAAAG GTGACTCTGT TATTGTCTTA
  ATCCAGATTT TATTTGAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47075407	NES11154307	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31658577					SNP	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47075407	NES11154307	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:166259023 () rs orientation: forward

Symbol	Name	Function Class
Frmpd4	FERM and PDZ domain containing 4	within coordinates
Rr7100	regulatory region 7100	1683 bp proximal