rs3165942 SNP Detail

Summary

• ID
  rs3165942
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75580434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGACACCG GAGATATGAG AGAAAGTCCT GGCAAGCCAA
  AAGTATGCCC CCAGATGCTG GGGAGGAGAA TGATGGATCA GAGCGCACTC TCCCGGGAAA
  K
  CAAAAGTGGG GCACCAAGAA GCATGCCCAC TGGCACAATA AATCCTAAAC AGGCTCAGGA
  GAGAGCCCCT GGGGCTCCTG AAGAACAGCA GGGCCAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38521967	mCV27595418	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss147174575	ENSMUSSNP3433769	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3165942					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75580434 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	1094 bp distal
Rr216328	regulatory region 216328	34 bp distal
Rr220328	regulatory region 220328	634 bp distal
Rr220329	regulatory region 220329	within coordinates