rs3165946 SNP Detail

Summary

• ID
  rs3165946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75598934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGTTAGAG GTGTGTCACT GTGGGAGTGG GATTTTATAC
  CCTAGTCCTA GCTTCCTGGA AGTCAGTCTT CTGTTAGCAG CCTTCAGATG AAGATGTAGA
  R
  CTCTCAGCTC CTCCTGCACC ATGCCTGCCT GGATGCTGCC ATGTTCTCGA CTTGATGATA
  ATGGACTGAA CCTCTGAACC TGTAAGCCAG CCGCAATTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38558445	mCV27595431	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3165946					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75598934 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
Cpgi1728	CpG island 1728	696 bp proximal
Gm66464	predicted gene, 66464	1371 bp upstream
Rr401992	regulatory region 401992	1145 bp upstream
Rr434120	regulatory region 434120	within coordinates
Rr434121	regulatory region 434121	639 bp proximal
Rr434122	regulatory region 434122	1206 bp proximal
Rr434123	regulatory region 434123	1382 bp proximal
Tssr94136	transcription start site region 94136	1343 bp upstream
Tssr98119	transcription start site region 98119	1082 bp downstream
Tssr98120	transcription start site region 98120	1165 bp downstream