rs31660709 SNP Detail

Summary

• ID
  rs31660709
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30730722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTTTCCC ATAGACTAGC TTGCCATTGT ACCCCCTTCC
  TCAATGCTCT GCCTACAGGT GTGAGCTCCC ACAGCTGGCT CTTTTGTTTG CTTTTTGAGA
  M
  AAGGTTCCTC TGTGTAGCCC TGGCTGTTCT GCAACTCTCT CTGTAGACGA GGCTGCATTC
  GAACTCCAGA GATCTGCCTG GCTCTGCCTC CCGAGTGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss46055800	mCV22838272	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss148696719	ENSMUSSNP2252956	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss322138553	CHEV_7_31816316	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs31660709					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30730722 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	1431 bp downstream
Rr644976	regulatory region 644976	359 bp distal
Rr644977	regulatory region 644977	491 bp proximal
Tssr65829	transcription start site region 65829	1556 bp upstream