rs31661143 SNP Detail

Summary

• ID
  rs31661143
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115820204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGCAAAACG TTCTTTTATT GTTGTTGTTG TTAATTACTT TTTTATTAGA TATTTTCTTC
  ATTTACATTT CAAATGCTAT CCTGAAAGCC CCCTATACCC TCCCCCCTTC CTGCTCCCCT
  ACCCACCCAC TCCCACTTCT TGGCCCTGGC GTTCCCCTGT ACTGGGGCAT ATAAAGTTTG
  CAAGACCAAG GGGCCTCTCT TCCCAAAGAT GGCTGGCTAG GCCATCTTCA GGCAAAACGT
  TCTTAATAGT GCTTCATCTA CGAGGCTTCC ACTTAAAGGT TAAAAAACAA AAAAACAAAA
  M
  AAAAAAAAAA AACAGCCTGT CATAAATATA AAGATAGCAT CAGGTACAGT ACGAAGAATG
  TGATTGGTTA GAACAGCTTG AACAGAATAA AGAAATACAA ATGGTGTTTT AAGTTTTATT
  CATAAAGTAT CAAGAGTGAT TTCTATCCAT TGACGAGGAG TATGTGGCTG TGGATGAGCC
  TGGTCAGTGC CCTGCATGTC TTCACCATTT GGACAGTCAC TTGTGCCTAC ACATGCCTGT
  TAACCACCCC CCACCCCCAT CCCCCTCCTC CCCATCCCCC ACCCCATCCT ACTTGGTGCC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45557194	mCV23906594	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31661143					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115820204 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	520 bp distal