rs31661194 SNP Detail

Summary

• ID
  rs31661194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122519899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC CCAGCTGCAC ATAGGTCTCC
  R
  GTGGATGTTG GTCCCCCTCC TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46200535	mCV22749700	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss47576224	NES11181201	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A		A	G	G		G	G	G		G
ss322844745	CHEV_8_124317060	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31661194					SNP	G	A	A	A	G	A	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576224	NES11181201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122519899 () rs orientation: forward

Symbol	Name	Function Class
Rr671926	regulatory region 671926	70 bp distal
Tssr79823	transcription start site region 79823	821 bp downstream
Tssr79824	transcription start site region 79824	688 bp downstream
Tssr79825	transcription start site region 79825	672 bp downstream
Tssr83237	transcription start site region 83237	971 bp upstream
Tssr83238	transcription start site region 83238	950 bp upstream
Tssr83239	transcription start site region 83239	928 bp upstream
Tssr83240	transcription start site region 83240	887 bp upstream
Tssr83241	transcription start site region 83241	811 bp upstream