rs31661200 SNP Detail

Summary

• ID
  rs31661200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122520198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGCTGT CTCTTCAAGG
  GTGATGTATG AGGCTGCTGA GGGTCCTGTG TCCTTAAGTC ACAGCAGCGC CCCATCCCCC
  GACCCTCACT GCACTGTGCA GACGTGGAGA TAAGTTTAAG TAAAGCCGTG GGGTACGGTT
  CAACCTTTCC CACCGAAGGG GTTCTACTCT CTCCCTCGGC CAACATCCAC TCTATGTAGG
  R
  GTGTCCCCAC CAACTTACCT CCAACAAAAG GCTCTTGCAG GCCATTCTGA GTCCATGAGG
  CAGATACTAC CATACAGCGT GGGTAAGCAG TCACTGGATA CAGGCTGAAG ACTCAGGGCA
  CAGCGGGTAG CATGACGTGG TGTACAGACA GCCCCATCAC AAGGCCCAAT GTCTGGCAAG
  TCCCTGTTGC TCGTTAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss47576230	NES11181204	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs31661200					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576230	NES11181204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122520198 () rs orientation: forward

Symbol	Name	Function Class
Rr671926	regulatory region 671926	369 bp distal
Tssr79823	transcription start site region 79823	1120 bp downstream
Tssr79824	transcription start site region 79824	987 bp downstream
Tssr79825	transcription start site region 79825	971 bp downstream
Tssr83237	transcription start site region 83237	1270 bp upstream
Tssr83238	transcription start site region 83238	1249 bp upstream
Tssr83239	transcription start site region 83239	1227 bp upstream
Tssr83240	transcription start site region 83240	1186 bp upstream
Tssr83241	transcription start site region 83241	1110 bp upstream