rs31662084 SNP Detail

Summary

• ID
  rs31662084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74004614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAACCGG ATACTCTTAA CTTAGGGGTA TCCAAACAAT
  GGAATGTGAT GCCAGATTAG TATCATTTAA ACACGTGACA GGGAACAAAT AACAGAATGG
  Y
  ACCTAATCAG TCACTTAGCT AGATATAGAA CCTGCAACTC ACCAGCAGCA GCTGCCTGAT
  GCCATGTGAA GGAACAAACT GGTTTTGGAT TTTTTTTTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49762410	NES12392804	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31662084					SNP	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762410	NES12392804	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74004614 () rs orientation: forward

Symbol	Name	Function Class
Gm15363	predicted gene 15363	1361 bp downstream
Gm62199	predicted gene, 62199	1184 bp downstream
Rr692060	regulatory region 692060	1614 bp distal