rs31662939 SNP Detail

Summary

• ID
  rs31662939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72966158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATGACAG TTCGTGTCTG GTAGGACCCA CTCGAATGTC
  ACCGGTTGAG GAAGGGGCCC TCGCTGTCCC TTTTGCACCG GTACCAATGG TTAGAGTAAA
  R
  AGCGCAGTTT CACAAATCAG TACTTTTAGT GGACCGTATC CTGGAAAAAG ATGAAAGCTG
  TGGGTAGTAG GCAGTTTGCC TTAGCATGTA ACCTGATGGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49762825	NES12394159	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31662939					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762825	NES12394159	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72966158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22785	CpG island 22785	288 bp distal
Gm61870	predicted gene, 61870	within coordinates
Naa10	N(alpha)-acetyltransferase 10, NatA catalytic subunit	608 bp upstream
Renbp	renin binding protein	within coordinates
Rr8729	regulatory region 8729	within coordinates
Tssr163592	transcription start site region 163592	636 bp upstream
Tssr163593	transcription start site region 163593	630 bp upstream
Tssr163594	transcription start site region 163594	611 bp upstream