rs31663067 SNP Detail

Summary

• ID
  rs31663067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67185543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTATGACAAC AAGGCAAGGC GTTATCTCTC TGTTCACGTG ACAGAGGGAG ACTGAGCTAG
  TGCAACAAGT AGAGGAAGTA TTTACAATAC ATCTAACAAT TAGACCTAAC CAGAATCCTC
  CATGCTAAAG AATGCAGATC AGAAATTTCA CAGCATTGGT GCTGTTGTTT ACTTGGGCAC
  CCTGGAAGAA TTAGTGGTCA GTTTTATGTT ACACGTGTGG GTTACCTTAT TTAGAGAGTC
  TTTTCTAAGA CTGTATTAAT AAACGACTCA AAGCAAAATT ATCCTTGCTG TTCTGTCTGA
  Y
  AACTACAACA TCTGACCTCC CATCTGAGAT TGTCATCACC ACCTGTTCCC TTCTTTGTGC
  TAATATTTGC TACATGCGTC TTCATAACCC AGACCAGAAA GAAACACTTC CTCACTAGTG
  TTCAAAAATT TCCCCAAAGG CAACTAAGTT TTCTCACCAA ATTTTAATAC ATTAAAAAGG
  AAACCATGGA ATTCGCTAGT ATATGCTGAC ACAGATCCTT CCAGGAAACC AGTTGTGAAT
  TCCTTGTTAG AATACAGTTA GTCCTCTGCC CCTGTATGTT TTCCACAAAC TATTAAAAAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45056999	mCV24326965	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31663067					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67185543 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	1943 bp distal
Rr34361	regulatory region 34361	1544 bp distal
Tssr7193	transcription start site region 7193	1576 bp downstream
Tssr7194	transcription start site region 7194	1549 bp downstream
Tssr7195	transcription start site region 7195	1496 bp downstream
Tssr7196	transcription start site region 7196	1457 bp downstream
Tssr7197	transcription start site region 7197	1386 bp downstream
Tssr7198	transcription start site region 7198	1516 bp upstream