rs31663761 SNP Detail

Summary

• ID
  rs31663761
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34464157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTAAG AGACGTAATG
  TTTGTTTTTT TAATGTATAA AATCCCCTGT TTGAGAGCTG CAAAATACAC TCAGATTCAA
  ACTGCCTCTT GTTTGTTTCT GTTTGTTTTT GTAACCGCCA AATCCTTTCC CACCTATCTT
  CGAGGACCCT CATTCCAGGG ACCCCCATAC CCAACTGGGG TTTTCCGTGG CAGTTTTGCA
  W
  TTGGGAAAAC AGAGATCCAG CTGGCGTATT GAAATGAAAT GTACCACAAA TTTCCAACAG
  AGGAACTGAC TGAACTACAT ATAGTCTATC AGTAAAAGGA TTAAAAGCAT CATTTACAGA
  CTGAAAAACA TTTAGTACTG CTGTGAATTC TGCCAGCTGA GCAGAAAGTC CAGGGGTCTC
  TATGACTACC TGTTGACTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45057514	mCV24132656	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss51237539	NES14285927	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A		A	A	A	A	A	A	A	A	T
ss148888419	ENSMUSSNP4888135	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31663761					SNP	T	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237539	NES14285927	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34464157 () rs orientation: forward

Symbol	Name	Function Class
Gm37233	predicted gene, 37233	942 bp downstream