rs31664114 SNP Detail

Summary

• ID
  rs31664114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74158516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTGGAC ACACCAAACT
  CTAGCTCAAT TCCATGACTA TGCCGTGAAA AACAATTCCA AGCGGAATCC AAACTTACTG
  AGGAATAATG TTTTGCTCAT TAAATATGCT AGCAAAATGG CTGTAGCAGC TGGAGGAGGT
  GCTGATAAAC TGAAGAACAG GATGTGAGAG CAGGCTCACT CTGTATTACA TATGCATGTG
  R
  TTCTTTTAGG TCTATGATTT GGTTTTCTCA GCATCCCCCA TCTGAACTTT TTACATGGCT
  CTGTAGGCTA GTCCATAGGA TTCTGATTTT ATATGCTTTT TTTTATAACT CTATGTTCTT
  TTCTGTATCC CTTTGACCTG ACCTTTTCAG TCTCTTTCAG TCTCAGCACT GTAACAGTTC
  TCTATCCCCA ACACAGATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49762342	NES12396768	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31664114					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762342	NES12396768	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74158516 () rs orientation: forward

Symbol	Name	Function Class
Mpp1	membrane protein, palmitoylated	within coordinates
Tssr163654	transcription start site region 163654	1250 bp upstream
Tssr163655	transcription start site region 163655	235 bp upstream