rs31664115 SNP Detail

Summary

• ID
  rs31664115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74158494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGCTAG AGTTTAAGCA
  GTGAGACTGG ACACACCAAA CTCTAGCTCA ATTCCATGAC TATGCCGTGA AAAACAATTC
  CAAGCGGAAT CCAAACTTAC TGAGGAATAA TGTTTTGCTC ATTAAATATG CTAGCAAAAT
  GGCTGTAGCA GCTGGAGGAG GTGCTGATAA ACTGAAGAAC AGGATGTGAG AGCAGGCTCA
  Y
  TCTGTATTAC ATATGCATGT GGTTCTTTTA GGTCTATGAT TTGGTTTTCT CAGCATCCCC
  CATCTGAACT TTTTACATGG CTCTGTAGGC TAGTCCATAG GATTCTGATT TTATATGCTT
  TTTTTTATAA CTCTATGTTC TTTTCTGTAT CCCTTTGACC TGACCTTTTC AGTCTCTTTC
  AGTCTCAGCA CTGTAACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49762343	NES12396767	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31664115					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762343	NES12396767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74158494 () rs orientation: forward

Symbol	Name	Function Class
Mpp1	membrane protein, palmitoylated	within coordinates
Tssr163654	transcription start site region 163654	1228 bp upstream
Tssr163655	transcription start site region 163655	213 bp upstream