rs31664118 SNP Detail

Summary

• ID
  rs31664118
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74156541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGGAAG GAAAGGACTG
  ACTCCTATAA ATTGTATTCT GACTTCCATA CACATGCTAT AAAATGAGTG CACACACACA
  CATGCTGTGG CATGAGTACA CACACTGCAT AATAATACTG TATAATAATA CTGAGTAATA
  AATAATTCTT TAAAAAAGTT AAAATGTTAA GAGTAACACT CTAGTGCAGA GATAAATTAT
  M
  TATTCCCAGC CTCTTTTTAT CCTATGATGA ACCATCTTTA CCTTCCACGC CAGACACTTG
  TCTCTAAAAT GACTTCTTTC CCTCAACTTG CACATTGAAA ACCCTGGCAA GGGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GGGTGTGTGC CAGTGCCATG ATGTGCATAT
  GAAAGTCAGG GGTCAACCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49762346	NES12396788	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31664118					SNP	A	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762346	NES12396788	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74156541 () rs orientation: forward

Symbol	Name	Function Class
Mpp1	membrane protein, palmitoylated	within coordinates
Tssr163653	transcription start site region 163653	924 bp upstream
Tssr163654	transcription start site region 163654	707 bp downstream
Tssr163655	transcription start site region 163655	1730 bp downstream