rs31664119 SNP Detail

Summary

• ID
  rs31664119
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74156288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAACTCT ACCCATCTTT
  GGGGCAGATA ATATAATAGA GATGTTTTTC TCATGAACTG AAGGATTGGT ACTGGAAGGT
  AGTACAGATA CAATACCCCC ACCTACCCAT CTCTCCAGCA CTGTTTTGTT TTTATGACAT
  GGAAAGAACA CAATGGTTTT GTTTAAACAT TTTGTTAAAA AGTTAAAATG TTGGGGCTGG
  M
  AATTTTTCAG CATTTGCCAC AGAAGGCTCA TAACCTGAGA ACCTGAAACC ATGTGGTGGA
  AGGAAAGGAC TGACTCCTAT AAATTGTATT CTGACTTCCA TACACATGCT ATAAAATGAG
  TGCACACACA CACATGCTGT GGCATGAGTA CACACACTGC ATAATAATAC TGTATAATAA
  TACTGAGTAA TAAATAATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49762347	NES12396793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31664119					SNP	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762347	NES12396793	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74156288 () rs orientation: forward

Symbol	Name	Function Class
Mpp1	membrane protein, palmitoylated	within coordinates
Tssr163653	transcription start site region 163653	671 bp upstream
Tssr163654	transcription start site region 163654	960 bp downstream
Tssr163655	transcription start site region 163655	1983 bp downstream