rs31664691 SNP Detail

Summary

• ID
  rs31664691
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122067914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGAGGGG GATGGAAAGC
  AGAGTAAATG ATGCGACTTC CCATTTTGTG TTAAACGGCG AGGAGGTCCT CCTCGCTGAG
  GACCGCACAG CGGACGAGCT GGGAACTGGA GGCGGAGCTG CTTTTGCCCC CCCCCCCCCC
  CAACACACAC ACCCCACCCC CCCACCCCCC GCTGACCCGC ACTAGTCCGA TGGCGGAGAC
  S
  GCTGGCCAGA ACTGCAGTGG AGCCGGGGAA GGAACGATTC TCCCGAGCCG CGGTTTCCGC
  AGGGAAACCT AAGCGAGTTC CTGTTTCGAC GCACTTCCGA AGCGTCGGAA CAGAGGAAGC
  CGCGCTGGCT GCCGGGAATC CGGAGTCGGA AAGATGGTGG TCACCAGGTC CGGGCTCTCC
  CGGACCAGGC TCCAAGAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss45558018	mCV23980381	ABI	CRAMUS_MOUSE	f	SNP		G			C		C
ss51020950	NES13905092	PERLEGEN	MM_PANEL2	f	SNP	G		C	C		C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31664691					SNP	G	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020950	NES13905092	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122067914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13766	CpG island 13766	within coordinates
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2	131 bp upstream
Gm17494	predicted gene, 17494	within coordinates
Rr584273	regulatory region 584273	within coordinates
Rr584274	regulatory region 584274	134 bp proximal
Tssr31491	transcription start site region 31491	106 bp upstream
Tssr31492	transcription start site region 31492	1288 bp upstream