rs31664846 SNP Detail

Summary

• ID
  rs31664846
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG GACAGTGTCA CTCTGGCTCC
  Y
  GGGCACACCA CGTGTCATGA GTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47576170	NES11181154	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31664846					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576170	NES11181154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518253 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	431 bp downstream
Rr671926	regulatory region 671926	645 bp proximal
Tssr79823	transcription start site region 79823	817 bp upstream
Tssr79824	transcription start site region 79824	935 bp upstream
Tssr79825	transcription start site region 79825	964 bp upstream
Tssr83237	transcription start site region 83237	670 bp downstream
Tssr83238	transcription start site region 83238	686 bp downstream
Tssr83239	transcription start site region 83239	700 bp downstream
Tssr83240	transcription start site region 83240	748 bp downstream
Tssr83241	transcription start site region 83241	821 bp downstream