rs31665140 SNP Detail

Summary

• ID
  rs31665140
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74919011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGTTCA CAGCGGCCTG
  GGAACCAGGA AGAGGATTGG GCCAGGAGCC TGTCACATCA ACTGGGTGGG GGAACTGAGA
  GACCCGGCAG CAGCAGGGAT GGGCAATGAG GAGGGATGGG GACTGGAACT CTGTTTGCAA
  GCCTGTTTTT CCATTCCCTA CCTGGTGGAA GAACTTAGAA GTAAATCTAC AAGGCTTGGC
  S
  TGGAATGCAT GTTTCACAAA CATTACTGAA ATAACTGTAA AGTTGGGAAA TTCGGAGCAT
  GTTTGAACGT CTCCTAGTTA AGTCAGGTAT GGGGTTGGCG GGGGGGGGGG GGGTTACGGT
  GCCGGTTTTT TTTTTTTCTT TCTTTCTTTT TCTCATCATT GGGAAGGTAT AGTACTTCGC
  TTTGATTTCT TCAGACCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49762057	NES12393942	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31665140					SNP	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762057	NES12393942	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74919011 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	223 bp upstream
Rr692140	regulatory region 692140	842 bp distal
Rr692141	regulatory region 692141	341 bp distal
Rr692142	regulatory region 692142	within coordinates
Tssr163681	transcription start site region 163681	872 bp upstream
Tssr163682	transcription start site region 163682	815 bp upstream
Tssr163683	transcription start site region 163683	254 bp upstream