rs31665141 SNP Detail

Summary

• ID
  rs31665141
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:74918718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTCGCTGATC TGGCTCTACA GCTTCCGACC AAGCACTCAG ACAACTTCTG
  S
  CCCTAGGAAT CTCTGCAGCT GTGCTTCTAA AGCCAGCGCT CCCTCCCCTC           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49762058	NES12393941	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31665141					SNP	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762058	NES12393941	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74918718 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	mRNA-UTR
Rr692140	regulatory region 692140	549 bp distal
Rr692141	regulatory region 692141	48 bp distal
Rr692142	regulatory region 692142	60 bp proximal
Tssr163681	transcription start site region 163681	579 bp upstream
Tssr163682	transcription start site region 163682	522 bp upstream
Tssr163683	transcription start site region 163683	within coordinates