rs31665142 SNP Detail

Summary

• ID
  rs31665142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74917559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATCCAA GCTAGACCTG
  CACCACTGGT GTAGTCAGTT ATACAGCTCC AGTGAAAAGC CAGTCTTCAG GATGTAAACT
  GTCAGCAAAG CTGGAGCAAG CAAGGGCCTG GAGCCAGGGG AGGTTCAGAA CCGCCAACAC
  TTGAGCTAGT GGAGCAGCAG CAGCAACTTT GGGACTGGCG ACCGCAGGGC TAGTCGGCGT
  Y
  CTCAGGCCTC TCATTAGGTC GCTAAAGTAA GCAGGCGGAG AAAAGTAAAC ACAGGCAAGT
  GCAGCTGAGT CTGGGAATGG GGCTTCAGCC ACCATCTCGG CTCAGCCTCC CAGGGGTCCC
  AGAGCGGTCC CGGGTGCTGC AGCCCTGCTC GCTAGCTCTG AGTTGCACAA CCAGAGCCAT
  CGGGACTCAA GCTGACCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49762059	NES12393952	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31665142					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762059	NES12393952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74917559 () rs orientation: forward

Symbol	Name	Function Class
Pls3	plastin 3 (T-isoform)	within coordinates
Rr692140	regulatory region 692140	within coordinates
Rr692141	regulatory region 692141	611 bp proximal
Rr692142	regulatory region 692142	1219 bp proximal
Tssr163681	transcription start site region 163681	569 bp downstream
Tssr163682	transcription start site region 163682	583 bp downstream
Tssr163683	transcription start site region 163683	1148 bp downstream