rs31665271 SNP Detail

Summary

• ID
  rs31665271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34101591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGGAAA GGAAAAAAAG
  AGAGAATGCT GACTTAATTA AAGATGGGTG GTTTTTTAGT AACAGGAAAG GGAAGCCAGT
  TTTGGAGGGA GAAAATCAAA TGAATATTGA TATTATTCAT ACTCAGGAAA AAAAGCCTTA
  AAGACTCTTA GGAAGTAAAA ATGGGGGGGC ATATGATTTT TTTCTTTTTA ATTTACATAT
  R
  TGTAAAGCTT CAGGCAGATT CATCTGTCAG CAGTATTTAT GATTAATGCA TCCATTTTGC
  ATCTAGAATT ATACAGGTCT GAATTAAAGG GGGAAATGTG AAAATTGCTA ATTAGAAAAC
  CAGTCATAAA CAAAATGTAT AAAGGTTGGT TACTAGTAGA TTATTAAAAG ATAAAGACAA
  TGATATCCAC TGAAATCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39312606	mCV23549097	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss147537815	ENSMUSSNP4132669	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31665271					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34101591 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Tssr131017	transcription start site region 131017	1914 bp downstream
Tssr133963	transcription start site region 133963	1912 bp upstream