rs31665531 SNP Detail

Summary

• ID
  rs31665531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36396038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA TTCCCGGCCT AAGAGCTGGC
  Y
  CAGGGAGACG CAATCGAGCC CGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46056334	mCV25433230	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss148848959	ENSMUSSNP5648923	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C		C
ss322166725	CHEV_7_37481632	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31665531					SNP	C	T	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36396038 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18884	CpG island 18884	within coordinates
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	254 bp downstream
Gm72509	predicted gene, 72509	29 bp upstream
Rr645554	regulatory region 645554	702 bp distal
Rr645555	regulatory region 645555	within coordinates
Rr645556	regulatory region 645556	1015 bp proximal
Rr645557	regulatory region 645557	1516 bp proximal
Tshz3	teashirt zinc finger family member 3	1505 bp upstream
Tssr65916	transcription start site region 65916	13 bp upstream
Tssr65917	transcription start site region 65917	1389 bp upstream
Tssr65918	transcription start site region 65918	1599 bp upstream
Tssr72063	transcription start site region 72063	539 bp upstream