rs31665605 SNP Detail

Summary

• ID
  rs31665605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT TATCCCAGGA ACCACAGCCC
  R
  TGGTCACTAG TGGCCAGGTT GGTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47576179	NES11181164	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A
ss145806680	ENSMUSSNP5553562	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31665605					SNP	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576179	NES11181164	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518676 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	854 bp downstream
Rr671926	regulatory region 671926	222 bp proximal
Tssr79823	transcription start site region 79823	394 bp upstream
Tssr79824	transcription start site region 79824	512 bp upstream
Tssr79825	transcription start site region 79825	541 bp upstream
Tssr83237	transcription start site region 83237	247 bp downstream
Tssr83238	transcription start site region 83238	263 bp downstream
Tssr83239	transcription start site region 83239	277 bp downstream
Tssr83240	transcription start site region 83240	325 bp downstream
Tssr83241	transcription start site region 83241	398 bp downstream