rs31665609 SNP Detail

Summary

• ID
  rs31665609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGATGG TGGTGGTGGT
  GGTCAGAAAT TCCACAGCTA CCACAACGCA CGGGCCATGC ACAGGATCTC AGGCAGCACG
  GACAGACTGT TTTCTATGAC ATCCTGACAG ACACCTGAAA AAGGCTCCTC CACATCCACA
  CTTATCCCAG GAACCACAGC CCATGGTCAC TAGTGGCCAG GTTGGTACCC AGGGCAAGCA
  R
  AGGACAGCCA CGTATCCCAC TTCCAGAGTG TTCTTGCTCA CTGGACAAAC AGGTCCAGCT
  TAGACACCCT CAGGGAGACT GAAGACACTG CTGGGAGCCC AGAATGCTCA GATGCCCAGT
  GATGAACAGG AGACAAGAGA TAGTTTGAGT TCGTGGTTAC CCTCCAGAGA TCTTCGAGGC
  AGTAACCCCT GCACAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47576185	NES11181168	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31665609					SNP	G	G	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576185	NES11181168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518714 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	Intron
Rr671926	regulatory region 671926	184 bp proximal
Tssr79823	transcription start site region 79823	356 bp upstream
Tssr79824	transcription start site region 79824	474 bp upstream
Tssr79825	transcription start site region 79825	503 bp upstream
Tssr83237	transcription start site region 83237	209 bp downstream
Tssr83238	transcription start site region 83238	225 bp downstream
Tssr83239	transcription start site region 83239	239 bp downstream
Tssr83240	transcription start site region 83240	287 bp downstream
Tssr83241	transcription start site region 83241	360 bp downstream