rs3166628 SNP Detail

Summary

• ID
  rs3166628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72761595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCCAAC GTGCTTCGAG
  CCTTCTCTCC CAAGTTTGGG GAGCTAGTGG CAGAGGAGGC ACGGCGAAAG GGGGAACTGC
  GCTACATGCA CTCTCGAGTG GTGGCCAACT CAGAGGAAAT TGCCTTCTAC GGGGGCCATG
  AGGTGGGGCA GGTTGAGATG CTGCTTAAAT AGCAGAGGAG GTGGCTGGGA GACCTATTGC
  M
  GTCAGCTATA AGCAGTAAGG GAAGCCCAAC AAGGCCTTCT CAGGCTGATG TTAAAGTTGT
  AGATAGACAC TGGGACAAGC TTGGGGGTAG GCTTTGGATG GCTATAACCT TAAGATGCAG
  AAATGGAGAA ATGGCACCAT TGGGTGGGAA CTTCCCTGTG CTGGCTGCCT GCAACCTCCA
  AGCCACTTCT GCTTCCTTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24751669	Abcd1_JC5693_2	ROCHEBIO	RPAMM	f	SNP	C		A	A	A	A	A	A		A	A	A			A		A		C			A	A
ss38364548	NES09695309	PERLEGEN	MM_PANEL2	f	SNP		C			A		A		A		A	A	A	A		A		A		C	A			A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs3166628					SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364548	NES09695309	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72761595 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	within coordinates
Bcap31	B cell receptor associated protein 31	1814 bp upstream
Cpgi22777	CpG island 22777	1371 bp distal
Cpgi22778	CpG island 22778	574 bp distal
Gm61833	predicted gene, 61833	150 bp upstream
Rr406105	regulatory region 406105	1288 bp downstream
Rr691928	regulatory region 691928	1825 bp distal
Rr691931	regulatory region 691931	1239 bp distal
Rr691932	regulatory region 691932	460 bp proximal
Tssr161281	transcription start site region 161281	1371 bp downstream
Tssr161282	transcription start site region 161282	1239 bp downstream
Tssr161283	transcription start site region 161283	1210 bp downstream
Tssr161284	transcription start site region 161284	1190 bp downstream
Tssr161285	transcription start site region 161285	925 bp downstream
Tssr163562	transcription start site region 163562	1802 bp upstream
Tssr163563	transcription start site region 163563	1780 bp upstream
Tssr163564	transcription start site region 163564	1523 bp upstream
Tssr163565	transcription start site region 163565	147 bp upstream
Tssr163566	transcription start site region 163566	125 bp upstream