rs3166629 SNP Detail

Summary

• ID
  rs3166629
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:72761650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCACGGC GAAAGGGGGA
  ACTGCGCTAC ATGCACTCTC GAGTGGTGGC CAACTCAGAG GAAATTGCCT TCTACGGGGG
  CCATGAGGTG GGGCAGGTTG AGATGCTGCT TAAATAGCAG AGGAGGTGGC TGGGAGACCT
  ATTGCAGTCA GCTATAAGCA GTAAGGGAAG CCCAACAAGG CCTTCTCAGG CTGATGTTAA
  W
  GTTGTAGATA GACACTGGGA CAAGCTTGGG GGTAGGCTTT GGATGGCTAT AACCTTAAGA
  TGCAGAAATG GAGAAATGGC ACCATTGGGT GGGAACTTCC CTGTGCTGGC TGCCTGCAAC
  CTCCAAGCCA CTTCTGCTTC CTTGGTAAAA TTGTCTTGGA CATTTTGGAT TCTAGCTTTG
  GATTCTAGTG ATTTGTGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12755142	Abcd1_1_JC5693_3	ROCHEBIO	RPAMM	f	SNP	T	A	A	A	A	A	A	A	A	A	A					A		T	T				A
ss24751671	Abcd1_JC5693_4	ROCHEBIO	RPAMM	f	SNP	T	A	A	A	A	A	A	A	A	A	A			A		A		T	T			A	A
ss38364547	NES09695310	PERLEGEN	MM_PANEL2	f	SNP				A		A		A		A	A	A	A		A		A			T	A			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs3166629					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38364547	NES09695310	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72761650 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	Intron
Bcap31	B cell receptor associated protein 31	1869 bp upstream
Cpgi22777	CpG island 22777	1426 bp distal
Cpgi22778	CpG island 22778	629 bp distal
Gm61833	predicted gene, 61833	205 bp upstream
Rr406105	regulatory region 406105	1343 bp downstream
Rr691928	regulatory region 691928	1880 bp distal
Rr691931	regulatory region 691931	1294 bp distal
Rr691932	regulatory region 691932	405 bp proximal
Tssr161281	transcription start site region 161281	1426 bp downstream
Tssr161282	transcription start site region 161282	1294 bp downstream
Tssr161283	transcription start site region 161283	1265 bp downstream
Tssr161284	transcription start site region 161284	1245 bp downstream
Tssr161285	transcription start site region 161285	980 bp downstream
Tssr163562	transcription start site region 163562	1857 bp upstream
Tssr163563	transcription start site region 163563	1835 bp upstream
Tssr163564	transcription start site region 163564	1578 bp upstream
Tssr163565	transcription start site region 163565	202 bp upstream
Tssr163566	transcription start site region 163566	180 bp upstream