rs31666546 SNP Detail

Summary

• ID
  rs31666546
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72538087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCTCCTC TCAACCCTGA GAAGAATCAC CTTCAAAGGG
  TGACTATGAA ATGACACTAA GAAGTGATTG ATGGGGTCCG ATGTGAAGGC AGGCCTGACC
  K
  TTCTACTCTC CATCTTGCCT ACAACTTACA GCAACTACCC AGGCTAGGAC AGATTGGGAT
  GGCTCTGGGT CACTGATCCT TGGACAAAAG CCTCAGATAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss49763064	NES12396441	PERLEGEN	MM_PANEL2	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs31666546					SNP	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49763064	NES12396441	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72538087 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	487 bp distal
Rr6090	regulatory region 6090	1087 bp distal
Rr7747	regulatory region 7747	486 bp proximal
Rr10758	regulatory region 10758	560 bp distal
Tssr5633	transcription start site region 5633	1204 bp downstream
Tssr5634	transcription start site region 5634	216 bp downstream
Tssr5635	transcription start site region 5635	571 bp downstream
Tssr161220	transcription start site region 161220	1743 bp downstream
Tssr161221	transcription start site region 161221	1684 bp downstream
Tssr161222	transcription start site region 161222	1669 bp downstream
Tssr161223	transcription start site region 161223	1499 bp downstream
Tssr161224	transcription start site region 161224	1445 bp downstream
Tssr161225	transcription start site region 161225	1267 bp downstream
Tssr161226	transcription start site region 161226	1216 bp downstream
Tssr161227	transcription start site region 161227	1166 bp downstream
Tssr161228	transcription start site region 161228	117 bp upstream
Tssr161229	transcription start site region 161229	150 bp upstream
Tssr161230	transcription start site region 161230	174 bp upstream
Tssr161231	transcription start site region 161231	191 bp upstream
Tssr161232	transcription start site region 161232	242 bp upstream
Tssr161233	transcription start site region 161233	314 bp upstream
Tssr161234	transcription start site region 161234	334 bp upstream
Tssr161235	transcription start site region 161235	399 bp upstream
Tssr161236	transcription start site region 161236	442 bp upstream
Tssr161237	transcription start site region 161237	496 bp upstream
Tssr161238	transcription start site region 161238	532 bp upstream
Tssr161239	transcription start site region 161239	581 bp upstream
Tssr161240	transcription start site region 161240	595 bp upstream
Tssr161241	transcription start site region 161241	631 bp upstream
Tssr161242	transcription start site region 161242	664 bp upstream
Tssr161243	transcription start site region 161243	828 bp upstream
Tssr161244	transcription start site region 161244	852 bp upstream
Tssr161245	transcription start site region 161245	947 bp upstream
Tssr161246	transcription start site region 161246	1103 bp upstream
Tssr161247	transcription start site region 161247	1126 bp upstream
Tssr161248	transcription start site region 161248	1395 bp upstream
Tssr163547	transcription start site region 163547	137 bp downstream
Tssr163548	transcription start site region 163548	243 bp downstream
Tssr163549	transcription start site region 163549	320 bp downstream
Tssr163550	transcription start site region 163550	375 bp downstream
Tssr163551	transcription start site region 163551	460 bp downstream
Tssr163552	transcription start site region 163552	586 bp downstream
Tssr163553	transcription start site region 163553	672 bp downstream
Tssr163554	transcription start site region 163554	691 bp downstream
Tssr163555	transcription start site region 163555	718 bp downstream