rs31666547 SNP Detail

Summary

• ID
  rs31666547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72535773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCAGCTCC CTGGTAGAAC TACGAATCCA TGACAACCGT
  ATCCGCAAAG TGCCCAAGGG CGTGTTCAGC GGGCTCCGGA ACATGAACTG CATTGGTGAG
  R
  CTAGTCTGTA CCTTAGCATC AGGCATAAAG GAGACAGGTA GAGGATATCT CTTTCAGCCA
  GGGCAGCTGG GTCCATGTAG TCATGGAAAA GCCCTGTGTG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49763065	NES12396454	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs31666547					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49763065	NES12396454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72535773 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	973 bp distal
Rr4565	regulatory region 4565	1228 bp proximal
Rr6090	regulatory region 6090	1028 bp proximal
Rr7746	regulatory region 7746	982 bp distal
Rr10758	regulatory region 10758	1384 bp proximal
Tssr5633	transcription start site region 5633	1099 bp upstream
Tssr161208	transcription start site region 161208	1380 bp downstream
Tssr161209	transcription start site region 161209	1357 bp downstream
Tssr161210	transcription start site region 161210	1338 bp downstream
Tssr161211	transcription start site region 161211	1292 bp downstream
Tssr161212	transcription start site region 161212	1226 bp downstream
Tssr161213	transcription start site region 161213	1172 bp downstream
Tssr161214	transcription start site region 161214	802 bp downstream
Tssr161215	transcription start site region 161215	163 bp downstream
Tssr161216	transcription start site region 161216	145 bp downstream
Tssr161217	transcription start site region 161217	106 bp downstream
Tssr161218	transcription start site region 161218	93 bp downstream
Tssr161219	transcription start site region 161219	32 bp downstream
Tssr161220	transcription start site region 161220	559 bp upstream
Tssr161221	transcription start site region 161221	573 bp upstream
Tssr161222	transcription start site region 161222	637 bp upstream
Tssr161223	transcription start site region 161223	803 bp upstream
Tssr161224	transcription start site region 161224	843 bp upstream
Tssr161225	transcription start site region 161225	1027 bp upstream
Tssr161226	transcription start site region 161226	1069 bp upstream
Tssr161227	transcription start site region 161227	1113 bp upstream
Tssr163544	transcription start site region 163544	731 bp upstream
Tssr163545	transcription start site region 163545	104 bp upstream
Tssr163546	transcription start site region 163546	40 bp upstream