rs31666548 SNP Detail

Summary

• ID
  rs31666548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72535357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGATAAG TCTAGAGCTG
  GCTGTAATGA GAACGCCCAA AACCATGCAT TATATGTATG GGTACAAGAC GAAATCTGTC
  AGGTCCCATT TTTTTTTGAC AGAAATCTTT ACGTTTTGTT GACTCATCTG AACAACACAG
  AAAGTGTATT CCATCATAGC TCTTAGAGAA ACTGTCTAGC AAAGTATGCT AGGCAGTGAT
  R
  GCATTACCAG GGCAGCTTGG AGCTAACCTC AGCTCCTTGC CCTACACTCT ACTCACCAAC
  ACATACTGAT CTCCATGAGA CCATTAAAGG TTCAGATGTT TCCCAAGTGC CATCAGTAGC
  AAGTTCAGGA GGCAGAGGAG AGGGGAGGTG GAGTGGGGGG CTGGGGTGCT CACCCTGGTT
  GCCTGCCCCG TTTTAGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49763066	NES12396453	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs31666548					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49763066	NES12396453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72535357 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	557 bp distal
Rr4565	regulatory region 4565	1644 bp proximal
Rr6090	regulatory region 6090	1444 bp proximal
Rr7746	regulatory region 7746	566 bp distal
Rr10758	regulatory region 10758	1800 bp proximal
Tssr5633	transcription start site region 5633	1515 bp upstream
Tssr161208	transcription start site region 161208	964 bp downstream
Tssr161209	transcription start site region 161209	941 bp downstream
Tssr161210	transcription start site region 161210	922 bp downstream
Tssr161211	transcription start site region 161211	876 bp downstream
Tssr161212	transcription start site region 161212	810 bp downstream
Tssr161213	transcription start site region 161213	756 bp downstream
Tssr161214	transcription start site region 161214	386 bp downstream
Tssr161215	transcription start site region 161215	214 bp upstream
Tssr161216	transcription start site region 161216	260 bp upstream
Tssr161217	transcription start site region 161217	292 bp upstream
Tssr161218	transcription start site region 161218	312 bp upstream
Tssr161219	transcription start site region 161219	370 bp upstream
Tssr161220	transcription start site region 161220	975 bp upstream
Tssr161221	transcription start site region 161221	989 bp upstream
Tssr161222	transcription start site region 161222	1053 bp upstream
Tssr161223	transcription start site region 161223	1219 bp upstream
Tssr161224	transcription start site region 161224	1259 bp upstream
Tssr161225	transcription start site region 161225	1443 bp upstream
Tssr161226	transcription start site region 161226	1485 bp upstream
Tssr161227	transcription start site region 161227	1529 bp upstream
Tssr163544	transcription start site region 163544	315 bp upstream
Tssr163545	transcription start site region 163545	299 bp downstream
Tssr163546	transcription start site region 163546	330 bp downstream