rs31666549 SNP Detail

Summary

• ID
  rs31666549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:72534648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGAGCA GAAGGGTTTC
  TGGGACTTCA CCTTGGATGA TGGGCTGCTC ATGATGAATG ATGAGGAGGC TTCAGGTTCA
  GACACCACTT CAGGTGTCCC CGACCTGGAC TCTGTCACAC CTACCTTCAG TGCCATGTGT
  CCTTTCGGTT GCCACTGCCA CCTGCGGGTT GTTCAGTGCT CTGACTTGGG TGAGTCACTA
  R
  GCACTTAGGC TAAGAGTGTA CAGAGAAGCA CAGGCCCTGC CTGGGAGCCC TTACTAAAAA
  GAATACATTT GCTACCCTGT GAGATGGGTT TAAAACTGTA GGAGTGGGGA GGTTGAGTCA
  CCACAGGCTG AGGTGTATGA GGGTGCTCAG AGTCCCTGCA TTTCTCCCAG TGTCTGTGTG
  TGTCCATATG CATGTATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49763067	NES12396452	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs31666549					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49763067	NES12396452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72534648 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bgn	biglycan			Intron
				Noncoding-Transcript-Variant
Tssr161208	transcription start site region 161208			255 bp downstream
Tssr161209	transcription start site region 161209			232 bp downstream
Tssr161210	transcription start site region 161210			213 bp downstream
Tssr161211	transcription start site region 161211			167 bp downstream
Tssr161212	transcription start site region 161212			101 bp downstream
Tssr161213	transcription start site region 161213			47 bp downstream
Tssr161214	transcription start site region 161214			272 bp upstream
Tssr161215	transcription start site region 161215			923 bp upstream
Tssr161216	transcription start site region 161216			969 bp upstream
Tssr161217	transcription start site region 161217			1001 bp upstream
Tssr161218	transcription start site region 161218			1021 bp upstream
Tssr161219	transcription start site region 161219			1079 bp upstream
Tssr161220	transcription start site region 161220			1684 bp upstream
Tssr161221	transcription start site region 161221			1698 bp upstream
Tssr161222	transcription start site region 161222			1762 bp upstream
Tssr161223	transcription start site region 161223			1928 bp upstream
Tssr161224	transcription start site region 161224			1968 bp upstream
Tssr163544	transcription start site region 163544			360 bp downstream
Tssr163545	transcription start site region 163545			1008 bp downstream
Tssr163546	transcription start site region 163546			1039 bp downstream