rs31666550 SNP Detail

Summary

• ID
  rs31666550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72533750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGAACT TTTGCACCCT
  GAGTCCTGGG AAATGAGAGG AAGGAAGATA TGAAGTGTTG ATCCCCTAAT TCCCAGGACC
  CTTGCTTGAT GCTGCTACAG CATTGAAGAA TCTATTTCCC CTCCTCCCAT CCCCCCATCC
  CCATCTTCCT CTCTCTCTTC TCCCACTTCA TGCCTTGGCC TCTGGGCCTT CTCAGACCAA
  Y
  ATGGGCACTG TGGAGGGACT CAGGCAGTGA AGGGGGTGAC TCACTCATTG CCCAGTTAAA
  CTAATAGCAT CCAAATCTTC CAGGCTCACT CTCAGAAGGG GTAACCTGTG GGGCCAATAG
  CTGTGCTTCA TCTCAGCCTC CAATTGGCCT CACTGACCCC CAACCTCAGG CAGTGAAGCG
  GGCTCTGGCT GACTCGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49763068	NES12396459	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs31666550					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49763068	NES12396459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72533750 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	651 bp proximal
Rr7746	regulatory region 7746	699 bp proximal
Tssr161208	transcription start site region 161208	619 bp upstream
Tssr161209	transcription start site region 161209	653 bp upstream
Tssr161210	transcription start site region 161210	676 bp upstream
Tssr161211	transcription start site region 161211	705 bp upstream
Tssr161212	transcription start site region 161212	760 bp upstream
Tssr161213	transcription start site region 161213	827 bp upstream
Tssr161214	transcription start site region 161214	1170 bp upstream
Tssr161215	transcription start site region 161215	1821 bp upstream
Tssr161216	transcription start site region 161216	1867 bp upstream
Tssr161217	transcription start site region 161217	1899 bp upstream
Tssr161218	transcription start site region 161218	1919 bp upstream
Tssr161219	transcription start site region 161219	1977 bp upstream
Tssr163544	transcription start site region 163544	1258 bp downstream
Tssr163545	transcription start site region 163545	1906 bp downstream
Tssr163546	transcription start site region 163546	1937 bp downstream