rs31666551 SNP Detail

Summary

• ID
  rs31666551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72532801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGCTG CTCTATTCTC
  TCCAGGAAGC AGCTTTGCTC TAACCTCCGT GCAGGCTTTT CTGGCCACTG GTATTAGATG
  GGAGCCAGGG AAGGCCATGA AAATCACTGG GTTTCAGTCT CTGTGTGTGT GAATACCCGC
  CCCCCCCACA CACACACACA ACACAAACCT AGGGCATTTT AAGCAATAAC ACAGGGTGAG
  R
  TTTCTTCTGG GGCTGACAGC CATTAGATGG GCAGTGCTTG TGCCTAGGTT TAACCAAACC
  AGGATGTCCC AGCCTCCCCT TTCTGCCAAT GCACGCACAT GCACACACAC ACACACACAC
  ACACACACCT CTGCTGGTGC TAAGAATTTC AAAGCAGCAA GCAGTCAGCA TAACCCCCTT
  GTCAGCTGGG TTCCTTCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss49763069	NES12396458	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs31666551					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49763069	NES12396458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72532801 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4564	regulatory region 4564	1600 bp proximal
Rr7746	regulatory region 7746	1648 bp proximal
Tssr161208	transcription start site region 161208	1568 bp upstream
Tssr161209	transcription start site region 161209	1602 bp upstream
Tssr161210	transcription start site region 161210	1625 bp upstream
Tssr161211	transcription start site region 161211	1654 bp upstream
Tssr161212	transcription start site region 161212	1709 bp upstream
Tssr161213	transcription start site region 161213	1776 bp upstream