rs31666717 SNP Detail

Summary

• ID
  rs31666717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GCTCAGATGC CCAGTGATGA
  R
  CAGGAGACAA GAGATAGTTT GAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47576194	NES11181173	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	G	G	A	A		G	A	G		A
ss145806691	ENSMUSSNP3525833	ENSEMBL	ENSEMBL_Sanger	f	SNP	G							A
ss322844733	CHEV_8_124316001	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31666717					SNP	G	G	G	G	A	G	G	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576194	NES11181173	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518840 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1018 bp downstream
Rr671926	regulatory region 671926	58 bp proximal
Tssr79823	transcription start site region 79823	230 bp upstream
Tssr79824	transcription start site region 79824	348 bp upstream
Tssr79825	transcription start site region 79825	377 bp upstream
Tssr83237	transcription start site region 83237	83 bp downstream
Tssr83238	transcription start site region 83238	99 bp downstream
Tssr83239	transcription start site region 83239	113 bp downstream
Tssr83240	transcription start site region 83240	161 bp downstream
Tssr83241	transcription start site region 83241	234 bp downstream