rs31666723 SNP Detail

Summary

• ID
  rs31666723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122518944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTGCTC ACTGGACAAA
  CAGGTCCAGC TTAGACACCC TCAGGGAGAC TGAAGACACT GCTGGGAGCC CAGAATGCTC
  AGATGCCCAG TGATGAACAG GAGACAAGAG ATAGTTTGAG TTCGTGGTTA CCCTCCAGAG
  ATCTTCGAGG CAGTAACCCC TGCACAGACA TCAGACACAT CCTACCTTAC ATCTGTACAG
  Y
  CCTGCTCCAA AGGCCGTGTG GCTGCTTATT CCATCCCCTC TGTGACGTTC TGTAAGAGAG
  GATGTGGGAT GTTACATTCT CTTCCTGTTT AAGCTTAGCT TTACTGGCTC CTCCTGCTCG
  TGTCTTCCTC TAGAGAAGTC TCTGGCTGCG AAGCTGAGCA CAAGTTCCTA TTCCAGCATG
  TTTCCACATC GCGCAGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47576200	NES11181178	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31666723					SNP	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576200	NES11181178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122518944 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1122 bp downstream
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	126 bp upstream
Tssr79824	transcription start site region 79824	244 bp upstream
Tssr79825	transcription start site region 79825	273 bp upstream
Tssr83237	transcription start site region 83237	16 bp upstream
Tssr83238	transcription start site region 83238	within coordinates
Tssr83239	transcription start site region 83239	9 bp downstream
Tssr83240	transcription start site region 83240	57 bp downstream
Tssr83241	transcription start site region 83241	130 bp downstream