rs31666938 SNP Detail

Summary

• ID
  rs31666938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81819891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCAAACT TGAAATCTAT
  TTGTTTCATC CTCTTGAGGG CTGGGACCTA TAGGTCTGTG CCAGCACAAA GGGCACCTCC
  TCATGACTCA GTAGTACTAA AGTGACACCT GGGGAAGATG TCTCTCTAAG ATGAGGTTGA
  GGAGGGACAG GGGGGTGGCA GAGAAGCCCT TTGAAGAGGT TTCCTGGAGC CTGGCCCTGA
  R
  CTCATAGACG GTTGAGCCTT ACCTGTCCTC TTGGGGAGCA CTGTCCTCTT GGGGAGCACT
  GTCCTCTTGG GGAGCACTGT CCTCTTGGGG AGCACTGGGG TCCTAGGGAT TTGCCTGAGG
  TCTTTTTTGT TTTGTTTTGT TTTTGTTTTT CCGAGACAGG GTTTCTCTGT GTAGCCCTGG
  CTGTCCTGGA ACTCACTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075792	NES12089146	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31666938					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075792	NES12089146	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81819891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7402	CpG island 7402	1184 bp proximal
Csdc2	cold shock domain containing C2, RNA binding	1069 bp upstream
Gm62067	predicted gene, 62067	within coordinates
Rr506349	regulatory region 506349	1281 bp distal
Rr506350	regulatory region 506350	591 bp proximal
Rr506351	regulatory region 506351	1008 bp proximal
Rr506352	regulatory region 506352	1080 bp proximal
Tssr132315	transcription start site region 132315	1063 bp upstream
Tssr132316	transcription start site region 132316	1156 bp upstream
Tssr132317	transcription start site region 132317	1190 bp upstream
Tssr132318	transcription start site region 132318	1221 bp upstream
Tssr135513	transcription start site region 135513	1005 bp downstream