rs31667647 SNP Detail

Summary

• ID
  rs31667647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122519093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAACCC CTGCACAGAC
  ATCAGACACA TCCTACCTTA CATCTGTACA GCCCTGCTCC AAAGGCCGTG TGGCTGCTTA
  TTCCATCCCC TCTGTGACGT TCTGTAAGAG AGGATGTGGG ATGTTACATT CTCTTCCTGT
  TTAAGCTTAG CTTTACTGGC TCCTCCTGCT CGTGTCTTCC TCTAGAGAAG TCTCTGGCTG
  Y
  GAAGCTGAGC ACAAGTTCCT ATTCCAGCAT GTTTCCACAT CGCGCAGTCA GCTGACAGCC
  ACCCAGGCCA CTTCCTGACA CCCAACAGCC CTGTGCCACC ACTTCACCAC TACAGTGGGT
  GAGCATCCAG AAGGGGTTGT GAGCCCTTAG CTCTGCTGTC TCGCTAAGGT CCAGCTGCAG
  GCCAAACACA CATCAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47576206	NES11181184	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C		T	C	T		C
ss322844736	CHEV_8_124316254	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31667647					SNP	C	C	C	C	T	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576206	NES11181184	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122519093 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1271 bp downstream
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	15 bp downstream
Tssr79824	transcription start site region 79824	95 bp upstream
Tssr79825	transcription start site region 79825	124 bp upstream
Tssr83237	transcription start site region 83237	165 bp upstream
Tssr83238	transcription start site region 83238	144 bp upstream
Tssr83239	transcription start site region 83239	122 bp upstream
Tssr83240	transcription start site region 83240	81 bp upstream
Tssr83241	transcription start site region 83241	5 bp upstream