rs31667653 SNP Detail

Summary

• ID
  rs31667653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122519282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGTGCCA CCACTTCACC ACTACAGTGG GTGAGCATCC
  AGAAGGGGTT GTGAGCCCTT AGCTCTGCTG TCTCGCTAAG GTCCAGCTGC AGGCCAAACA
  Y
  ACATCAGGAC AACCAAGTGT CCCTGAATGC CAAGATTCAT CTGTCCTATG CACCCTGCTG
  GCCTTGAAAG AAGAAAACAT ATAGCTGGCT TTGTTCAAAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47576215	NES11181193	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31667653					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576215	NES11181193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122519282 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	1460 bp downstream
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	204 bp downstream
Tssr79824	transcription start site region 79824	71 bp downstream
Tssr79825	transcription start site region 79825	55 bp downstream
Tssr83237	transcription start site region 83237	354 bp upstream
Tssr83238	transcription start site region 83238	333 bp upstream
Tssr83239	transcription start site region 83239	311 bp upstream
Tssr83240	transcription start site region 83240	270 bp upstream
Tssr83241	transcription start site region 83241	194 bp upstream