rs31667779 SNP Detail

Summary

• ID
  rs31667779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73333601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACAGAAA GAAGACTCAA
  TTGGTCCCTT GGATGGGCTA CTACTTGCCC ACTGCTCACA AACCTCATCA GGGATAGCTG
  TCAGCCAGGT CATTCTACCT GAGCTACTGC TACAAGGTTT GTCCTTGGGT GGCCTGTAGA
  CAAGAAGAGA AGGTATTGGC CAGGATTCAA GCACAGCTAA ACTTAACTAG ATGTTTCTTG
  Y
  ATATAGCAGA AGAAGGACCC CCAAGACCTG ACCATTAACC CCCAGTGTCA GGGCCTACCT
  GCTTCTCTAA TCTTTTTTGC CTTGTCATCC TCTATATCCT GGGATCTGGG TTTTAATGTT
  TTTAGAGTAA TAAAACATTT GTGTTGTGCC ACCATACCTC TGTCTTCTGT GTAGGAATGC
  AGATGGGAAG CACCTTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49762675	NES12395270	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31667779					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762675	NES12395270	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73333601 () rs orientation: forward

Symbol	Name	Function Class
B230340J04Rik	RIKEN cDNA B230340J04 gene	1028 bp upstream
Rr6109	regulatory region 6109	1001 bp distal
Rr7767	regulatory region 7767	1653 bp distal
Tafazzin	tafazzin, phospholipid-lysophospholipid transacylase	within coordinates