rs31667889 SNP Detail

Summary

• ID
  rs31667889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81822426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGATGGAG GGTGGGAGTG
  GGGGTTGGGG GGAGCTCTTT CCCAAATTCA ACTCCATCCC AGAGGTCTCT GGACATGAAT
  GCCCAGGTTC TGGGTGTCTC CTCCCGTCCT TACCCCACAC TGCATTTTCC CAAAACATCT
  ATTTGCCTAT CCTTGTCTCT CCAGCCCCAC CTTGACAAAA CTAGTGCAAA CAGAAGCTAG
  Y
  GGCGAAGGGT CCCAGGAGGA CACGCCAAGT TGTCCCAGGC CTAGAGAAAG ATGGCTGGAC
  AAGGTTGGAA GATGCTTATT GGCTAGGGAG GGGGCTCCCT AGTGGCCCTC AAGGACCCAC
  AGGGATGGAT AAATGGGGGA GTAAGGATAT TTGCCAGCCC ATCCAAAGGC AGAGTGGCCC
  CCCACCGCCC CACATCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48075804	NES12089118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31667889					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48075804	NES12089118	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81822426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7402	CpG island 7402	1131 bp distal
Csdc2	cold shock domain containing C2, RNA binding	within coordinates
Gm62067	predicted gene, 62067	1517 bp upstream
Rr506350	regulatory region 506350	1528 bp distal
Rr506351	regulatory region 506351	1456 bp distal
Rr506352	regulatory region 506352	within coordinates
Rr506353	regulatory region 506353	223 bp proximal
Rr506354	regulatory region 506354	1645 bp proximal
Tssr132315	transcription start site region 132315	1386 bp downstream
Tssr132316	transcription start site region 132316	1351 bp downstream
Tssr132317	transcription start site region 132317	1325 bp downstream
Tssr132318	transcription start site region 132318	1291 bp downstream
Tssr135513	transcription start site region 135513	1509 bp upstream