rs31668509 SNP Detail

Summary

• ID
  rs31668509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73046899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCCGCCA CTGCCCGGCT
  GACAATATCT TTTAAACCTC ATTTATACTA TGTTTTCCTT CTTGCTATTA TTCTCTAAAT
  AATACAATGT AAATAGTATT TTCATAGCAT TTACATTGTA TTCGGTATCA TAAGCAATTT
  AAAGATGCAT CAACTGTAAA GGAGCGCTGC TAAGTTACTC ACACTCCAGA GAACAGAACA
  R
  CCCTCACCAG TGCTCATACA GGTAACCTCC ATTAAACCCA GTAGGGTATA AAAAGCCACA
  AAACAAGTCA AGTACCAGGG CAGAATTCCT TTTCTTTTCT TTTCTTTTCT TTTCTTTTCT
  TTTCTTTTCT TCTCTAAGAT TTATTTATTT ATTATATGTA AGTACACTGT AGCTGTCTTC
  AGTCACTCCA GAAGAGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49762790	NES12393716	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31668509					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762790	NES12393716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73046899 () rs orientation: forward

Symbol	Name	Function Class
Rr4620	regulatory region 4620	102 bp proximal
Rr10016	regulatory region 10016	1699 bp distal
Rr10766	regulatory region 10766	341 bp proximal