rs31668597 SNP Detail

Summary

• ID
  rs31668597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:122519555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACATAT AGCTGGCTTT
  GTTCAAACAG CTAAGCTGCA TTCCAGTATG AATACTGGGA ACATGGCCGC ATGGCCCAAG
  CCTTCCCCTT CTGAGGAGCT AGACAAGGCC TGCCTGGCAG CATGTGTGTG AACAAGGGCG
  GCGGCAGAGT CCTCATGTGG AGGGCTGAGT GCTCTCCAGA CTACAGTACA TGCCACTCCC
  R
  GAGGCTGCTT TCTTATGCCT CCCCTAATAT GGCCAGGGCC CAAGTGCATC CTGGGAGTCT
  GCTGTCTTAG CTCCTTCCCA AACCTCAGAC TCACCATGAC TACATAAGGG GGGAGGGGGT
  GCACTCCACA GAAGGTGGGC TGTGGGGGTG AGGACACAGG CCAAGTGTTT CCAAGGTTGC
  TAGAACAGGC AAGGCAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47576221	NES11181199	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31668597					SNP	G	G	G	G	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47576221	NES11181199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122519555 () rs orientation: forward

Symbol	Name	Function Class
Jph3	junctophilin 3	Intron
Rr671926	regulatory region 671926	within coordinates
Tssr79823	transcription start site region 79823	477 bp downstream
Tssr79824	transcription start site region 79824	344 bp downstream
Tssr79825	transcription start site region 79825	328 bp downstream
Tssr83237	transcription start site region 83237	627 bp upstream
Tssr83238	transcription start site region 83238	606 bp upstream
Tssr83239	transcription start site region 83239	584 bp upstream
Tssr83240	transcription start site region 83240	543 bp upstream
Tssr83241	transcription start site region 83241	467 bp upstream