rs31668629 SNP Detail

Summary

• ID
  rs31668629
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154934778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTCTGTC AGGGCTGTGG
  TCACCTTAGC CTAGCTGCCT TATCCAAGGG CTGAAAAGAT AGAGTAAGTG ACTCTTTATT
  TCCATTATAA TTTCTTTCTT CCTGGAACTG TCTCTCTCAC CTGGAAACTG GAATTAACCC
  AGTTCTAAAA TTTAGATTCA CATGGTGCTT GTCTCTGCGA AATGATTAAA GGGTTCAGAG
  W
  CTGTGAATGG GGGAGCCAGG AGTCCTTGGT ATCCAGACAG CTCTCTTCTC AGGGGAAGGA
  TGAATGGGTC TCTGCTTTCT CCCAGGCAGA GTTTGCCAGG CCTTGTGAGC CAGAGTGTCT
  CCTCCCCTGG CCTCCTGGCT AGGCTCTAAT TCTGCCTCCG TTGTCAGGGC AGGTCTGGGA
  AGGATGAGGG AATTGTCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45056579	mCV24610698	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31668629					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154934778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	630 bp proximal
Gm29282	predicted gene 29282	1853 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	within coordinates
Rr372279	regulatory region 372279	1735 bp downstream
Rr396410	regulatory region 396410	526 bp upstream
Tssr248	transcription start site region 248	491 bp downstream
Tssr9521	transcription start site region 9521	654 bp upstream
Tssr9522	transcription start site region 9522	912 bp upstream
Tssr14331	transcription start site region 14331	502 bp downstream
Tssr14332	transcription start site region 14332	516 bp downstream
Tssr14333	transcription start site region 14333	526 bp downstream