rs31669965 SNP Detail

Summary

• ID
  rs31669965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153364770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT GTTGTATTTT TGAAGTACTG
  R
  AGAGTAACTC AAGGTTACCC TACTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45057083	mCV25366629	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss145743782	ENSMUSSNP6033533	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31669965					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153364770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi867	CpG island 867	1129 bp distal
Dhx9	DExH-box helicase 9	1364 bp upstream
Rr396394	regulatory region 396394	1203 bp downstream
Rr396395	regulatory region 396395	74 bp upstream
Rr420682	regulatory region 420682	1427 bp distal
Rr420684	regulatory region 420684	1489 bp distal
Rr420685	regulatory region 420685	874 bp distal
Rr420686	regulatory region 420686	within coordinates
Tssr9460	transcription start site region 9460	1201 bp downstream
Tssr14270	transcription start site region 14270	1362 bp upstream
Tssr14271	transcription start site region 14271	1343 bp upstream
Tssr14272	transcription start site region 14272	1334 bp upstream