rs31670030 SNP Detail

Summary

• ID
  rs31670030
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72759166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGGACC TCAGCACCCA
  TTAGGCTTCC TTCCAAGAGT AGAAGCCTCT GCTGCCAGGA GCTATACATG TCTTCCAGTC
  GCTTCTACAG TGGGACTGGG ACTGCAGTGT TCATACATGT ATTTTCTGCA AACGCCACCA
  CCTAAGCCTC TGCACAAGAA AGCAGGCCCA TTTCCTCCAG AGCTTATGAG GGGCTGATAA
  M
  CCTAGTAGCC TCCAGCCTCC TTCTAAAGCT GCTTTTGAAA ACTAGATAGG CCTTCCGAAT
  GCTCGCACGA ATGCACAGGG TGTAGGCCTC CATTTACTCT CAAAAGGCCC ACAAGAGCGA
  CTCCTAGAGG GCGGGAATCC AGGCCAAAAG CAAATACAGG TCTCCACAGA GCACGTCCAG
  GCCTTACCCA GAGAAAGTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49762939	NES12395284	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31670030					SNP	C	C	C	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49762939	NES12395284	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72759166 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	1037 bp upstream
Bcap31	B cell receptor associated protein 31	within coordinates
Cpgi22777	CpG island 22777	521 bp proximal
Cpgi22778	CpG island 22778	1499 bp proximal
Rr406105	regulatory region 406105	841 bp upstream
Rr691928	regulatory region 691928	within coordinates
Rr691929	regulatory region 691929	114 bp proximal
Rr691930	regulatory region 691930	356 bp proximal
Rr691931	regulatory region 691931	605 bp proximal
Tssr161281	transcription start site region 161281	1017 bp upstream
Tssr161282	transcription start site region 161282	1152 bp upstream
Tssr161283	transcription start site region 161283	1193 bp upstream
Tssr161284	transcription start site region 161284	1226 bp upstream
Tssr161285	transcription start site region 161285	1379 bp upstream
Tssr163562	transcription start site region 163562	585 bp downstream
Tssr163563	transcription start site region 163563	638 bp downstream
Tssr163564	transcription start site region 163564	882 bp downstream